Tools

riboSeed

Assemble short reads through rDNA repeats.

cgFind

Easily get complete genomes from NCBI

annofilt

Filter dodgy annotations from contig ends

Thats right: the script is so cool, it has a logo

EzClermont

Determine the Clermont phylotype of a given E. coli assembly.

happie

Pan-mobilome analysis pipeline

PlentyofBugs

PlentyOfBugs

Find a compatible reference genome for your seqeunced isolate

Chordomics

Visulalize function-taxa links

focusDB

construct high-accuracy 16s amplicon database by mining the SRA for reassemmbly