Here be dragons….

sraFind

I was curious how many complete genomes had publicly available data associated on the SRA. We do this in 4 stages:

1. Parse NCBI’s prokaryotes.txt file, write out Entrez cmds

2. Run all those entrez commands in parallel

3. Parse results

4. Plot results

See the README here to learn more

Viruses in AD

Click here for a peek at the state of viral metagenome detection from anaerobic digestion:

Cheap Wine

2018

We did a very informal blind taste test of 14 wines under 7 euro.

The 2018 analysis can be found here

2019

We reviewed 10 wines this year: The new 2019 analysis!

Comparing 3 Phage Finding Tools

Here I compare 4 phage finding tools

Poker Simulations

Have you ever wanted to run lots of Texas Hold’em simulations? I have, so I wrote this. One day it might be a shiny app.